The Grey squares are the resistors, and the gold specs are the pin holes for the LEDS.
The LEDs I am installing do fit, except the base of the LED which is a little wider in circumference then the original LEDs, this only requires my shaving a small amount of plastic off the illuminating plastic board they fit into.
I know your explanation should normally cover anyones questions on this topic, but I'm fresh out of the box as far as electronics go, honestly just earlier this month I decided I want to learn about this stuff from scratch, and I'm set on it.
Now when I installed these I did have short and long ends, which I payed no attention to, out of 11 LEDs I fudged up the one I mentioned earlier by burning off the connection to the resistor, and now I have 1 more LED simply not working even tho the connections look fine. Rajagra's explanation was somewhat understood and misunderstood, so I present this diagram of the LED board in hopes of better understanding what I am doing wrong.