I use felt, waffled rubber drawer liner, and the thick EPDM that I make my mats from, sometimes all 3.
The waffle rubber is the most compressible, and does not slip around as much as felt. The EPDM is heavy and I try to lay it at the bottom so that it just muffles the vibrations by brute force and weight. For voids that are not simply large and flat and accommodated with sheets, I fold layers into rectangles or cut strips and roll them into cylinders to get just the right sizes and shapes.
Other people have used multiple layers of duct tape alone, or duct tape along with other materials.