Soldered a Nerd 60 PCB recently myself and you're pretty much right for the most part.
There is no option to use rgb on the Nerd 60 pcb, which tbh is the case for almost any 60% pcb.
'Side LEDs' refers to the LEDs used for the underglow and need to be single color smd like the ones in your link.
For the top of the pcb you actually have two options for LEDs tho, since GONs pcbs feature smd led spots on top of the board aswell.
So you could either go with regular 1.8mm or 2x3x4mm switch LEDs,
or use smd LEDs on top of the pcb aswell.
Pic of
Lastpilot's Nerd Crystal build log for reference.
Take note that these are directly on the pcb tho, so top smd really only makes sense combined with a clear plate or at least clear switches.
I believe Hoffman used top smd with a non transparent plate for his build for example.