And the cutout for the dipswitches or equivalent, as well as the support fins, so you don't, say, put chips on top of them.
If by "support fins", you mean what I have circled here, you can actually remove those entirely
Show Image
(http://i.imgur.com/KsKHtDK.jpg)
They do offer extra support, however they are not necessary. What is necessary is that the standoffs are there to raise the pcb to a certain height in order to allow clearance for caps, controllers, etc.
Also, the cutout for the DIP switches isn't entirely necessary. If the standoffs are high enough, the PCB should still fit even without a hole if for some reason you don't want to bother with that.
Ah, sorry. My goal is to design a PCB that folks can drop into a 60% enclosure. Not to make a one-off :) Also, it's _really_ hard to remove them from a milled aluminum enclosure. :)
As a starting point for a discussion, I believe this to be the canonical set of dimensions for a 60% board.
Show Image
(https://www.dropbox.com/s/evxj6fyebcjbi8y/Screenshot%202014-12-17%2020.49.03.png?dl=1)
I apologise for re-opening it but I believe this picture is missing a vital piece of information; what's the y distance from the case to the highest standoffs?