I definitely prefer the higher actuation point. I wish I could get a Model F with actuation at 1.5–2 mm into the stroke, and 2+mm of post-actuation travel.
There are two big problems I have with MX switches though, and neither is the actuation point per se. My issues are: (1) How non-tactile they are. After the tactile point, they immediately going back to being just as stiff as they were before (or actually, stiffer), so there’s very little feedback for your fingers, and the post-actuation part of the stroke is also much more tiring than a decent tactile/clicky switch. (2) They stick slightly on the upstroke, instead of effectively springing your finger upward (or at least returning smoothly), especially if you swap in lighter springs in an attempt to ameliorate problem #1.
You can tell that MX was designed first and foremost as a linear switch, with the clicky/tactile versions hacked together later as an afterthought. MX linear switches are okay if you lube them, especially MX black switches from ~1990, but almost all other tactile/clicky switches (IBM, Alps, SMK, Hi-Tek, NEC, Fujitsu, Topre, Omron, Burroughs, Marquardt, Matias, ...) are better than MX clicky/tactile switches, IMO.
I think if I were to use an MX-like-switch board on a regular basis, it would have to be vintage MX black switches (or linear Gaterons maybe), lubed, with Korean 65g springs, and some kind of solenoid/clicker/buzzer to give a bit of audio feedback at actuation.