Thanks to Hasu pointing out some really obvious errors I got my TMK drivers to compile error free, but I've run into a couple issues I need some direction on. 
When I initially plug in the keyboard it starts spitting out random characters. Once I press a key it stops, and after that I can press keys and most of them work fine including the ones that that were showing up before anything was pressed. I've looked everything over pretty thoroughly and I don't see any obvious shorts on the wiring. I've triple checked the pin out against my matrix.c file. All my diodes are facing the right direction.
Once I get it to stop randomly posting characters I have a hand full of keys that don't work in each row. :
t  -
a g k +
v Enter
Space
Looking at my wiring a couple of these sets are in the same column:
T G V - all in the same column
- + [Enter] - all in the same column
I'm not sure if this is an issue with my code or an issue with the switches/wiring. I'd just like some input before I start d-soldering and replacing things. 
Link to the whole folder: 
https://www.dropbox.com/s/f84nu3t28cd6z6y/50_Keyboard.zip?dl=0Matrix.c :
/*
Copyright 2012 Jun Wako <wakojun@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/
/*
 * scan matrix
 */
#include <stdint.h>
#include <stdbool.h>
#include <avr/io.h>
#include <util/delay.h>
#include "print.h"
#include "debug.h"
#include "util.h"
#include "matrix.h"
#ifndef DEBOUNCE
#   define DEBOUNCE	5
#endif
static uint8_t debouncing = DEBOUNCE;
/* matrix state(1:on, 0:off) */
static matrix_row_t matrix[MATRIX_ROWS];
static matrix_row_t matrix_debouncing[MATRIX_ROWS];
static matrix_row_t read_cols(void);
static void init_cols(void);
static void unselect_rows(void);
static void select_row(uint8_t row);
inline
uint8_t matrix_rows(void)
{
    return MATRIX_ROWS;
}
inline
uint8_t matrix_cols(void)
{
    return MATRIX_COLS;
}
void matrix_init(void)
{
    // initialize row and col
    unselect_rows();
    init_cols();
    // initialize matrix state: all keys off
    for (uint8_t i=0; i < MATRIX_ROWS; i++) {
        matrix[i] = 0;
        matrix_debouncing[i] = 0;
    }
}
uint8_t matrix_scan(void)
{
    for (uint8_t i = 0; i < MATRIX_ROWS; i++) {
        select_row(i);
        _delay_us(30);  // without this wait read unstable value.
        matrix_row_t cols = read_cols();
        if (matrix_debouncing[i] != cols) {
            matrix_debouncing[i] = cols;
            if (debouncing) {
                debug("bounce!: "); debug_hex(debouncing); debug("\n");
            }
            debouncing = DEBOUNCE;
        }
        unselect_rows();
    }
    if (debouncing) {
        if (--debouncing) {
            _delay_ms(1);
        } else {
            for (uint8_t i = 0; i < MATRIX_ROWS; i++) {
                matrix[i] = matrix_debouncing[i];
            }
        }
    }
    return 1;
}
bool matrix_is_modified(void)
{
    if (debouncing) return false;
    return true;
}
inline
bool matrix_is_on(uint8_t row, uint8_t col)
{
    return (matrix[row] & ((matrix_row_t)1<<col));
}
inline
matrix_row_t matrix_get_row(uint8_t row)
{
    return matrix[row];
}
void matrix_print(void)
{
    print("\nr/c 0123456789ABCDEF\n");
    for (uint8_t row = 0; row < MATRIX_ROWS; row++) {
        phex(row); print(": ");
        pbin_reverse16(matrix_get_row(row));
        print("\n");
    }
}
uint8_t matrix_key_count(void)
{
    uint8_t count = 0;
    for (uint8_t i = 0; i < MATRIX_ROWS; i++) {
        count += bitpop16(matrix[i]);
    }
    return count;
}
/* Column pin configuration
 * col: 0   1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  
 * pin: B0  B1  B2  B3  B7  D1  D2  D3  C6  C7  D6  D7  B4  B5  B6  F7  (Rev.A)
 * pin: //  //  //  //  //  //  //  //  //  //  // //   //  //  //  //                                 
 */
static void  init_cols(void)
{
    // Input with pull-up(DDR:0, PORT:1)
    DDRF  &= ~(1<<7);
    PORTF |=  (1<<7);
    
	//DDRE  &= ~(1<<6);
    //PORTE |=  (1<<6);
    
	DDRD  &= ~(1<<7 |1<<6|1<<3 |1<<2 | 1<<1);
    PORTD |=  (1<<7 |1<<6|1<<3 |1<<2 | 1<<1);
    
	DDRC  &= ~(1<<7 | 1<<6);
    PORTC |=  (1<<7 | 1<<6);
    
	DDRB  &= ~(1<<7 | 1<<6 | 1<<5 | 1<< 4 | 1<<3 | 1<<2 | 1<<1 | 1<<0);
    PORTB |=  (1<<7 | 1<<6 | 1<<5 | 1<< 4 | 1<<3 | 1<<2 | 1<<1 | 1<<0);
}
static matrix_row_t read_cols(void)
{
    return (PINB&(1<<0) ? 0 : (1<<0)) |
           (PINB&(1<<1) ? 0 : (1<<1)) |
		   (PINB&(1<<2) ? 0 : (1<<2)) |
		   (PINB&(1<<3) ? 0 : (1<<3)) |
		   (PINB&(1<<7) ? 0 : (1<<4)) |
		   (PIND&(1<<0) ? 0 : (1<<5)) |
		   (PIND&(1<<1) ? 0 : (1<<6)) |
		   (PIND&(1<<2) ? 0 : (1<<7)) |
		   (PIND&(1<<3) ? 0 : (1<<8)) |
		   (PINC&(1<<6) ? 0 : (1<<9)) |
		   (PINC&(1<<7) ? 0 : (1<<10)) |
		   (PIND&(1<<7) ? 0 : (1<<11)) |
		   (PINB&(1<<4) ? 0 : (1<<12)) |
		   (PINB&(1<<5) ? 0 : (1<<13)) |
		   (PINB&(1<<6) ? 0 : (1<<14)) |
		   (PINF&(1<<7) ? 0 : (1<<15));
}
/* Row pin configuration
 * row: 0   1   2   3  
 * pin: F6  F5  F4  F1  
 */
static void unselect_rows(void)
{
    // Hi-Z(DDR:0, PORT:0) to unselect
    DDRF  &= ~0b01110010;
    PORTF &= ~0b01110010;
}
static void select_row(uint8_t row)
{
    // Output low(DDR:1, PORT:0) to select
    switch (row) {
        case 0:
            DDRF  |= (1<<6);
            PORTF &= ~(1<<6);
            break;
        case 1:
            DDRF  |= (1<<5);
            PORTF &= ~(1<<5);
            break;
        case 2:
            DDRF  |= (1<<4);
            PORTF &= ~(1<<4);
            break;
        case 3:
            DDRF  |= (1<<1);
            PORTF &= ~(1<<1);
            break;        
    }
}
Keymap_common.h
/*
Copyright 2012,2013 Jun Wako <wakojun@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef KEYMAP_COMMON_H
#define KEYMAP_COMMON_H
#include <stdint.h>
#include <stdbool.h>
#include <avr/pgmspace.h>
#include "keycode.h"
#include "action.h"
#include "action_macro.h"
#include "report.h"
#include "host.h"
#include "print.h"
#include "debug.h"
#include "keymap.h"
extern const uint8_t keymaps[][MATRIX_ROWS][MATRIX_COLS];
extern const uint16_t fn_actions[];
/* GH60 keymap definition macro
 * K2C, K31 and  K3C are extra keys for ISO
 */
#define KEYMAP( \
    K00, K01, K02, K03, K04, K05, K06, K07,  K08, K09, K0A,  K0B, K0C,  K0D, K0E, K0F, \
    K10, K11, K12, K13, K14, K15, K16, K17,  K18, K19,           K1B, K1C,  K1D, K1E, K1F, \
    K20,          K22, K23, K24, K25, K26, K27, K28, K29, K2A,  K2B, K2C,  K2D, K2E, K2F, \
    K30, K31,                                      K36,            K39, K3A,  K3B,           K3D, K3E       \
) 	{\
		{ KC_##K00, KC_##K01, KC_##K02, KC_##K03, KC_##K04, KC_##K05, KC_##K06, KC_##K07, KC_##K08, KC_##K09, KC_##K0A, KC_##K0B, KC_##K0C, KC_##K0D, KC_##K0E, KC_##K0F, }, \
		{ KC_##K10, KC_##K11, KC_##K12, KC_##K13, KC_##K14, KC_##K15, KC_##K16, KC_##K17, KC_##K18, KC_##K19, KC_NO,        KC_##K1B, KC_##K1C, KC_##K1D, KC_##K1E, KC_##K1F, }, \
		{ KC_##K20, KC_NO,      KC_##K22, KC_##K23, KC_##K24, KC_##K25, KC_##K26, KC_##K27, KC_##K28, KC_##K29, KC_##K2A, KC_##K2B, KC_##K2C, KC_##K2D, KC_##K2E, KC_##K2F, }, \
		{ KC_##K30, KC_##K31, KC_NO,      KC_NO,      KC_NO,      KC_NO,      KC_##K36, KC_NO,      KC_NO,       KC_##K39, KC_##K3A, KC_##K3B, KC_NO,        KC_##K3D, KC_##K3E, KC_NO     }  \
	}
	
#endif
Keymap_poker.c :
#include "keymap_common.h"
const uint8_t PROGMEM keymaps[][MATRIX_ROWS][MATRIX_COLS] = {
KEYMAP( ESC,  Q,   W,   E,   R,   T,   Y,   U,   I,   O,   P,    BSPC, 7, 8, 9, MINS, \
		         TAB,  A,   S,   D,   F,   G,   H,   J,   K,   L,          ENT, 4, 5, 6, PPLS, \
		         LSFT, Z,   X,   C,   V,   B,   N,   M, QUOT, LBRC, DOT, 1, 2, 3, ENT,  \
		         LCTL, LALT,              SPC,           FN0, RBRC, COMM, 0, DOT),
};
const uint16_t PROGMEM fn_actions[] = {};LED.c (I just changed this to the F0 pin which isn't soldered to anything. 
/*
Copyright 2012 Jun Wako <wakojun@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/
#include <avr/io.h>
#include "stdint.h"
#include "led.h"
void led_set(uint8_t usb_led)
{
    if (usb_led & (1<<USB_LED_CAPS_LOCK)) {
        // output low
        DDRF |= (1<<0);
        PORTF &= ~(1<<0);
    } else {
        // Hi-Z
        DDRF &= ~(1<<0);
        PORTF &= ~(1<<0);
    }
}