I've got an extra row and column that he didn't have so I need to have a different mapping.  Is that data in a file that I can modify myself? I couldn't find anything like that in the download.  There were a couple errors in the image I posted, corrected below.
I'd need it to read(if it's reading top to bottom, left to right):
const matrix_def_t PROGMEM ROW_LIST[NUMBER_OF_ROWS] = {
   { REF_PORTE , 6 },
   { REF_PORTB , 0 },
   { REF_PORTE , 2 },
   { REF_PORTC , 6 },
   { REF_PORTD , 5 }
};
const matrix_def_t PROGMEM COL_LIST[NUMBER_OF_COLS] = {
   { REF_PORTB , 4 },
   { REF_PORTB , 5 },
   { REF_PORTD , 6 },
   { REF_PORTD , 7 },
   { REF_PORTC , 7 },
   { REF_PORTB , 6 },
   { REF_PORTD , 3 },
   { REF_PORTB , 3 },
   { REF_PORTB , 7 },
   { REF_PORTD , 0 },
   { REF_PORTD , 1 },
   { REF_PORTD , 2 }
};
Where the matrix layout is:
____  ____  ____  ____  ____  ____  ____  ____  ____  ____  _____  _____
         |        |        |R4C3|R4C4|         |         |R4C7|R4C8|         |          |            
R3C0|R3C1|R3C2|R3C3|R3C4|R3C5|         |R3C7|R3C8|R3C9|R3C10|R3C11 
R2C0|R2C1|R2C2|R2C3|R2C4|R2C5|R2C6|R2C7|R2C8|R2C9|R2C10|R2C11 
R1C0|R1C1|R1C2|R1C3|R1C4|R1C5|R1C6|R1C7|R1C8|R1C9|R1C10|R1C11 
R0C0|R0C1|R0C2|R0C3|R0C4|R0C5|R0C6|R0C7|R0C8|R0C9|R0C10|R0C11