For case, if you aren't going to need more than 3 3.5" hdd mounts you might consider the cheaper nzxt s340 instead. I have one and it's quite nice for the cost. There is going to be a motherboard refresh with USB3.1 soon, so I suppose you will swap it out for newer revision. You can get a smaller wattage PSU and save a chunk of change. Even with SLI 980 you probably really don't need more than 550w. 750w + is for tri sli territory. PC is so much more power efficient these days, the high watts PSU are no longer necessary.
There are some cheaper 1TB ssd around as well, like Crucial, Mushkin, Patriot where you can save $50 or so. Or, get better performer then go for a pci-e based m.2 ssd instead though you would probably have to settle for 512GB as larger ones are not easy to source. I wouldn't go for one of the AIO water coolers either. They are more twice as expensive and don't perform much better if at all than some air cooler, and they aren't actually much quieter either. As for the HDD, keep an eye on externals as they are often cheaper than the internal bare drive for some reason but have the same drive inside. I do that all the time saving $20-40 per drive or more sometimes depending when I catch sales. Or, the SSHD type are a decent compromise if you want better performance as a secondary drive with a smaller main ssd. The cost difference is worth it if you might be running any programs off it, not at all if it's just storage for media though.