Most LEDs go over the switches, so you would have to remove the LED to change switches. The major exceptions would be some (not not all...) Kailh box switches where the switch goes over the LED or boards with SMD LEDs where the LED is just part of the PCB and shines light up.
What confuses me about your story is how you desoldered the switches without removing the LEDs in the first place...what kind of switches did you have in there? Most switches do not have a notch that fits over the LED...
You certainly should be able to remove the LEDs though. They're not required for the board to work.
Thanks for your help. Seriously, I really appreciate it. I included some photos to show you. I had Jixian blues in the RK61 and desoldered them, hoping to solder in Gateron Silent reds. As you can see, the LEDs sit on top of the PCB and prevent me from putting them in. The whole point of this was to put in silent switches. I do have Kailh BOX Jades and some other Kailh switches (because I love them) but I was trying to make a silent board.
So, this is now my question: Can i just remove those LED lights sitting there? Would it **** up the PCB? And how do I go about doing that? (Someone else told me to change the housing from my Gaterons to housings that are compatible but that seems like a major process, and doesn't that affect the silencing of the Gaterons? I'd rather just yank out those LEDs, if possible.)
Any tips would be greatly appreciated and thank you guys for not calling me a total retard, which I now am.